Custom Software for the Genomics Industry
Clinical diagnostic laboratories can gain a significant advantage by ensuring their data conforms to FAIR principles — that is, data is easily findable, accessible, interoperable, and reusable. But many labs don’t recognize the importance of FAIR data or they find that implementing these principles is challenging. At Semaphore, we believe FAIR data sets forward-looking labs apart from their peers, giving […]
“Do we need a new laboratory information management system (LIMS) or can we make do with our current system?” This is a question we often hear from labs struggling to make their existing software do what they need. “Replace the LIMS” is generally not the answer labs want to hear. That’s because a new implementation can be costly and time-consuming. […]
Regular readers of Semaphore’s blog know that over the last decade we’ve spent hundreds of thousands of hours building software for some of the most innovative, fastest growing laboratories in the world. Our clients know that we have refined our process for collaboration across interdisciplinary teams into a pipeline that produces high-quality and repeatable work. Labbit is a concept we’ve […]
Day-to-day lab operations rely on workflows to manage people, tasks, and systems so that work follows a consistent process every time. Defined workflows help ensure that all the steps are done in the correct order, are free from errors, and meet regulatory requirements. But, representing lab workflows can be difficult. Without careful definition, you might introduce inaccuracies — such as […]
The Bio-IT World Conference & Expo in Boston is a fantastic opportunity to learn about the latest research and how it can be brought into clinical practice to improve people’s everyday lives. Every time I attend this conference, I’m excited by the potential for applying scientific discoveries at scale. This year, the conference was the first many of us have […]
If you’re building custom lab software or a new integration, the first thing you need to do is gather a list of requirements. In our work with clinical NGS labs, we start every engagement with an assessment of the current state and gap analysis. It’s our role to help lab staff translate their knowledge of the lab and its processes […]
On the Semaphore Solutions blog, we’ve talked a lot about the importance of a lab’s software stack and strategies for managing multiple software components — some you’ve bought off-the-shelf, some that are fully custom, and some with varying degrees of customization. But one thing we haven’t dug into is version control. This is a key part of managing any complex […]
In a 2018 article in The Journal of Molecular Diagnostics (JMD), the authors — Charles Myers, Matthew Swadley, and Alexis Carter — identified key gaps in functionality in laboratory information systems (LIS) for molecular labs. To continue the conversation, we collaborated with the Cleveland Clinic’s Molecular Pathology Section lab team on a response. In our article published on the JMD […]
Building custom laboratory software from the ground up requires robust planning and meticulous attention to detail. In the process of doing this for our clients and ourselves on our forthcoming product, we have developed our own software development best practices to ensure the implementation meets all the requirements. We’ve found this to be a magic mix — user and regulatory […]
Are you trying to decide if your lab should build its own custom software, buy off-the-shelf software (knowing you’ll inevitably have to customize it), or just keep stumbling along with Excel and paper-based tracking? The answer to this question will ultimately depend on your short- and long-term information system (informatics) strategy. How do you devise an informatics strategy? There are […]